Package: AutoScore 1.0.0
AutoScore: An Interpretable Machine Learning-Based Automatic Clinical Score Generator
A novel interpretable machine learning-based framework to automate the development of a clinical scoring model for predefined outcomes. Our novel framework consists of six modules: variable ranking with machine learning, variable transformation, score derivation, model selection, domain knowledge-based score fine-tuning, and performance evaluation.The details are described in our research paper<doi:10.2196/21798>. Users or clinicians could seamlessly generate parsimonious sparse-score risk models (i.e., risk scores), which can be easily implemented and validated in clinical practice. We hope to see its application in various medical case studies.
Authors:
AutoScore_1.0.0.tar.gz
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AutoScore.pdf |AutoScore.html✨
AutoScore/json (API)
# Install 'AutoScore' in R: |
install.packages('AutoScore', repos = c('https://nliulab.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/nliulab/autoscore/issues
- sample_data - 20000 simulated ICU admission data, with the same distribution as the data in the MIMIC-III ICU database
- sample_data_ordinal - Simulated ED data with ordinal outcome
- sample_data_ordinal_small - Simulated ED data with ordinal outcome
- sample_data_small - 1000 simulated ICU admission data, with the same distribution as the data in the MIMIC-III ICU database
- sample_data_survival - 20000 simulated MIMIC sample data with survival outcomes
- sample_data_survival_small - 1000 simulated MIMIC sample data with survival outcomes
- sample_data_with_missing - 20000 simulated ICU admission data with missing values
Last updated 5 days agofrom:c27af473a4. Checks:OK: 5. Indexed: yes.
Target | Result | Date |
---|---|---|
Doc / Vignettes | OK | Nov 18 2024 |
R-4.5-win | OK | Nov 18 2024 |
R-4.5-linux | OK | Nov 18 2024 |
R-4.4-win | OK | Nov 18 2024 |
R-4.4-mac | OK | Nov 18 2024 |
Exports:AutoScore_fine_tuningAutoScore_fine_tuning_OrdinalAutoScore_fine_tuning_SurvivalAutoScore_parsimonyAutoScore_parsimony_OrdinalAutoScore_parsimony_SurvivalAutoScore_rankAutoScore_rank_OrdinalAutoScore_rank_SurvivalAutoScore_testingAutoScore_testing_OrdinalAutoScore_testing_SurvivalAutoScore_weightingAutoScore_weighting_OrdinalAutoScore_weighting_Survivalcheck_datacheck_data_ordinalcheck_data_survivalcompute_descriptive_tablecompute_multi_variable_tablecompute_multi_variable_table_ordinalcompute_multi_variable_table_survivalcompute_uni_variable_tablecompute_uni_variable_table_ordinalcompute_uni_variable_table_survivalconversion_tableconversion_table_ordinalconversion_table_survivalplot_predicted_riskplot_survival_kmprint_performance_ci_survivalprint_performance_ordinalprint_performance_survivalprint_roc_performanceprint_scoring_tablesplit_datatransform_df_fixed
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